EM Model Challenge - 2015/2016
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model info
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Global Accuracy
Local Accuracy
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Target:
Tobacco Mosaic Virus: T0001_1ei7_A
T20S Proteasome: T0002_1yar_alpha_A
T20S Proteasome: T0002_1yar_beta_H
GroEL: T0003_1ss8_A
GroEL: T0003_1svt_A
GroEL: T0003_1svt_H
TRPV1 Channel: T0004_3j5p_A
Brome Mosaic Virus: T0005_1js9_A
β-Galactosidase: T0006_1jz7_A
γ-Secretase: T0007_5a63_A
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ab-initio
optimized cryoEM model
optimized other known model
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Single-model
validation
Comparison to other
submitted models
Comparison to the reference
structure
Knowledge-based
potentials
Estimates of
model accuracy
Superposition-free measures
(similarity of local
geometric features)
Superposition-based measures
(rigid body similarity)
Molprobity
#
Model
Molprb
Clash
Rot-out
Ram-out
Ram-fv
DFIRE
ProQ
QMEAN
DAVIS_QA
LDDT
CAD
RMSD
GDT_TS
GDT_HA
LGA_S
TMscore
TMalign
1
T0004EM119_1_A
2.542
21.37
0.37
0.16
81.20
-1366.37
-
0.602
0.371
0.803
0.751
1.936
91.954
77.2825
96.567
0.917
0.985
2
T0004EM120_1_A
1.456
0.10
4.17
0.16
93.06
-1580.42
0.630
-
0.360
0.812
0.772
1.452
91.093
76.165
97.223
0.912
0.986
3
T0004EM123_1_A
1.379
1.51
0.23
1.65
91.96
-1266.73
0.469
0.777
0.439
0.660
0.633
1.089
79.217
67.9425
81.808
0.984
0.830
4
T0004EM130_1_A
-
-
-
-
-
-
-
-
-
-
-
-
-
-
14.524
-
0.149
5
T0004EM130_2_A
-
-
-
-
-
-
-
-
-
-
-
-
-
-
6.463
-
0.090
6
T0004EM131_1_A
2.48
20.12
1.62
0.17
90.94
-942.63
0.496
0.668
0.396
0.804
0.749
1.157
91.351
76.6775
95.456
0.983
0.981
7
T0004EM133_1_A
1.608
2.70
0.23
0.00
89.94
-1148.16
-
-
0.431
0.687
0.648
1.349
79.948
68.415
82.859
0.968
0.840
8
T0004EM164_1_A
3.738
62.60
26.57
0.00
94.28
-1008.17
0.550
0.712
0.391
0.975
0.997
0.408
99.613
96.17
100
0.998
0.998
9
T0004EM183_1_A
2.499
10.06
0.69
23.32
49.20
-524.21
0.036
-
0.215
-
-
16.114
10.585
5.2475
28.422
0.362
0.409
10
T0004EM183_2_A
2.369
7.21
0.00
20.13
49.84
-490.81
-0.024
-
0.234
-
-
16.63
13.985
7.4
25.777
0.431
0.408
11
T0004EM183_3_A
2.591
13.49
0.69
18.53
53.67
-520.78
0.029
-
0.105
-
-
27.172
5.809
3.7425
8.097
0.183
0.181
12
T0004EM183_4_A
2.496
10.64
0.35
20.13
53.99
-517.97
-0.013
-
0.259
-
-
15.581
13.941
7.49
32.548
0.426
0.424
13
T0004EM183_5_A
2.489
11.02
0.69
16.61
57.51
-500.96
0.020
-
0.229
-
-
16.832
11.833
5.38
27.643
0.395
0.414
14
T0004EM183_6_A
2.509
11.20
0.35
13.74
55.27
-497.47
0.013
-
0.084
-
-
25.303
5.207
2.67
8.654
0.186
0.206
15
T0004EM183_7_A
2.528
9.31
1.39
15.97
58.15
-531.67
0.022
-
0.234
-
-
15.269
12.435
6.1975
31.994
0.397
0.413
16
T0004EM183_8_A
2.634
14.05
0.00
22.68
48.56
-493.72
-0.035
-
0.096
-
-
26.973
4.432
2.3675
8.052
0.163
0.185
17
T0004EM183_9_A
2.461
9.69
0.35
20.77
53.67
-486.43
-0.037
-
0.095
-
-
25.541
3.787
1.805
8.392
0.155
0.180
18
T0004EM183_10_A
2.483
10.06
0.35
18.85
52.40
-487.27
-0.041
-
0.087
-
-
26.436
4.131
1.9775
7.434
0.166
0.187
19
T0004EM192_1_A
1.661
3.69
0.20
0.35
91.51
-959.63
0.499
-
0.389
0.784
0.754
1.769
87.134
71.6
92.383
0.965
0.965
20
T0004EM193_1_A
Inf
-
3.47
3.37
92.00
-1187.83
-
0.709
0.438
0.674
0.641
1.37
78.959
69.75
81.282
0.970
0.823
21
T0004EM194_1_a
-
224.53
-
-
-
821700.99
-
-
0.168
0.005
0.117
11.04
25.645
9.3375
74.027
0.575
0.802
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